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collections
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data visualization
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network generation
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network analysis
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online data import
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core app
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import
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gene expression
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local data import
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PPI-network
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Network structure
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GO annotation
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regulatory networks
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Topology
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pathway
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heat map visualization
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networks
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export
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gene regulation
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functional module detection
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disease
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database
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cancer data analysis
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attribute generation
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animation
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network partitioning
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molecular structure
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linked data
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ID mapping
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simulation
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Random walk with restart algorithm
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network learning
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microarrays
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grouping
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gene-disease association
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Connection sub-graph discovery
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centrality analysis
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social network analysis
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shortest paths
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sequence similarity
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R
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Protein complex
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Pathway finding
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network alignment
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Gene prioritization
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gene co-expression
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data manipulation
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3d visualization
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structural biology
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SPARQL
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signaling
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SBML
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literature mining
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kegg
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JavaScript
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gene function prediction
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flux analysis
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cluster visualization
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variant analysis
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set visualization
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set analysis
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search
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python
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protein dynamics
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pathway reconstruction
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network repository
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inference
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genome visualization
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disease-disease association
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bayesian networks
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CX Support
Core App: CX JSON file reader and writer
CX Support
Core App: CX JSON file reader and writer
(3) 38490 downloads
dot-app
Import/export of Graphviz files in Cytoscape
dot-app
Import/export of Graphviz files in Cytoscape
(31) 10109 downloads
Legend Creator
A way to add legends of discrete and continuous mappings to your graph
Legend Creator
A way to add legends of discrete and continuous mappings to your graph
(2) 9503 downloads
D3.js Exporter
Network and Table Data Exporter for D3.js
D3.js Exporter
Network and Table Data Exporter for D3.js
(1) 9623 downloads
JGF App
Import / Export OpenBEL Networks. JSON Graph Format Network App handles more restrictive BEL schema.
JGF App
Import / Export OpenBEL Networks. JSON Graph Format Network App handles more restrictive BEL schema.
(1) 5034 downloads
Unsupported Plugins for Cytoscape 2.x
BiNoM
Import/Export of System Biology file formats (BioPAX level 3, SBML, CellDesigner). Analysis and manipulation of biological networks.
BiNoM
Import/Export of System Biology file formats (BioPAX level 3, SBML, CellDesigner). Analysis and manipulation of biological networks.
(17)
SessionForWeb
Saves Cytoscape session in Web format.
SessionForWeb
Saves Cytoscape session in Web format.
(0)
GPML-Plugin
Enables import of GPML file via import menu.
GPML-Plugin
Enables import of GPML file via import menu.
(10)
SubnetworkCreator
Create subnetworks for disconnected graphs.
SubnetworkCreator
Create subnetworks for disconnected graphs.
(2)
